There are 124 verses that call for tolerance and patience that have been cancelled and replaced by one, single verse. This verse is called the Verse of the Sword:
"But when the forbidden months are past, then fight and slay the Pagans wherever ye find them, and seize them, beleaguer them, and lie in wait for them in every stratagem (of war)..." Surah 9:5
Verses that support the Verse of the Sword
1) “Fight them, and Allah will punish them by your hands, cover them with shame, help you (to victory) over them, heal the breasts of believers” (Surah 9:14).
2) “O ye who believe! Truly the Pagans are unclean; so let them not, after this year of theirs, approach the Sacred Mosque” (Surah 9:28).
3) “The Jews call ‘Uzayr a son of God, and the Christians call Christ the son of God. That is saying from their mouth; (in this) they but imitate the Unbelievers of old used to say. Allah’s curse be on them: how they are deluded away from the Truth!” (Surah 9:30).
4) “O Prophet! Strive hard against the Unbelievers and the Hypocrites, and be firm against them. Their abode is Hell – an evil refuge indeed” (Surah 9:73).
5) “O ye who believe! Fight the Unbelievers who gird you about, and let them find firmness in you: and know that Allah is with those who fear Him” (Surah 9:123).
Some of the verses abrogated by the Verse of the Sword:
1) “Those who believe (in the Qua’an), and the Christians and the Sabians – any who believe in Allah and the Last Day, and work righteousness, shall have their reward with their Lord: on them shall be no fear, nor shall they grieve” (Surah 2:62).
2) “Quite a number of the People of the Book wish they could turn you (people) back to infidelity after ye have believed, from selfish envy, after the Truth hath become manifest unto them: but forgive and overlook, till Allah accomplish his purpose” (Surah 2:109).
3) “But because of their breach of their Covenant, We cursed them, and made their hearts grow hard; they change the words from their (right) places and forget a good part of the Message that was sent them, nor wilt thou cease to find them – barring a few – ever bent on (new) deceits: but forgive them, and overlook (their misdeeds): for Allah loveth those who are kind” (Surah 5:13).
4) “Leave alone those who take their religion to be mere play and amusement, and are deceived by the life of this world. But proclaim (to them) this (truth): that every soul delivers itself to ruin by its own acts: it will find for itself no protector or intercessor except Allah: if it offered every ransom, (or reparation), none will be accepted: such is (the end of) those who deliver themselves to ruin by their own acts: they will have for drink (only) boiling water, and for punishment, one most grievous: for they persisted in rejecting Allah” (Surah 6:70).
5) “But if the enemy incline towards peace, do thou (also) incline towards peace, and trust in Allah” (Surah 8:61)
6) “And dispute ye not with the People of the Book, except with means better (than mere disputation), unless it be with those of them who inflict wrong (and injury); but say, ‘We believe in the revelation which has come down to us and in that which came down to you; our God and your God is One; and it is to Him we bow (in Islam)” (Surah 29:46).
7) “And remember We took a covenant from the Children of Israel (to this effect): worship none but Allah” (Surah 2:83).
8) “Say: Will ye dispute with us about Allah, seeing that He is our Lord and your Lord; that we are responsible for our doings and ye for yours; and that we are sincere (in our faith) in Him?” (Surah 2:139)
9) “Fight in the cause of Allah those who fight you, but do not transgress limits; for Allah loveth not transgressors” (Surah 2:190)
10) “But fight them at the Sacred Mosque, unless they (first) fight you there” (Surah 2:191)
11) “But if they cease, Allah is Oft-Forgiving Most Merciful” (Surah 2:192).
12) “But there is no compulsion in religion” (Surah 2:256).
13) “So if they dispute with thee, say: ‘I have submitted my whole self to Allah and so have those who follow me,’ And say to the People of the Book and so to those who are unlearned: ‘do ye (also) submit yourself? If they do, they are in right guidance, but if they turn back, thy duty is to convey the Message” (Surah 3:20).
14) “Let not the Believers take for friends or helpers unbelievers rather than believers; if any do that, in nothing will there be help from Allah: except by way of precaution, that ye may guard yourself from them” (Surah 3:28).
15) “Those men – Allah knows what is in their hearts; so keep clear of them, but admonish them, and speak to them a word to reach their souls” (Surah 4:63) .
16) “He who obeys the Messenger, obeys Allah: but if any turn away, we have not sent thee to watch over their (evil deeds)” (Surah 4:80).
17) “But Allah records their nightly (plots): so keep clear of them, and put thy trust in Allah” (Surah 4:81).
18) “Then fight in Allah’s cause – thou art held responsible only for thyself” (Surah 4:84).
19) “Except those who join a group between whom and you there is a treaty (of peace), or those who approach you with hearts restraining them from fighting you as well as fighting their own people. If Allah had pleased, He could have given them power over you, and they would have fought you: therefore, if they withdraw from you but fight you not, and (instead) send you (guarantees of ) peace, then Allah hath opened no way for you (to war against them)” (Surah 4:90).
20) “O ye who believe! Violate not the sanctity of the Symbols of Allah, nor of the Sacred Month” (Surah 5:2).
Other verses that were abrogated by the Verse of the Sword:
Surah 5: 99
Surah 6: 66; 104; 106- 108; 112; 135; 158
Surah 7:183; 199
Surah 10: 41, 46, 99, 108, 109
Surah 11: 121
Surah 13: 40
Surah 15: 3, 85, 88, 94
Surah 16: 82, 125, 127
Surah 17: 54
Surah 19: 84
Surah 20: 130, 135
Surah 22: 68
Surah 23: 54, 96
Surah 24: 54
Surah 28: 55
Surah 30: 60
Surah 32: 30
Surah 34: 25
Surah 39: 15
Surah 41: 34
Surah 42: 6, 15, 48
Surah 43: 83, 89
Surah 44: 59
Surah 45: 14
Surah 46: 35
Surah 50: 39
Surah 52: 48
Surah 53: 29
Surah 58: 8-9, 11
Surah 73: 10
Surah 76: 8
Surah 86: 17
Surah 88: 22- 24
Surah 109: 6